UNIVERSITY
OF TOYAMA
富山大学
Institute of Natural MedicineNatural Products Chemistry
天然資源探索を象徴する海洋・熱帯植物・海綿・生薬市場の写真
RESEARCH

Unlocking the Potential of Natural Products at the Molecular Level.

From natural-product discovery and elucidation of biosynthesis and mechanisms of action to enzyme engineering and the development of drug-discovery leads, we pursue natural products chemistry from multiple perspectives.

Research Themes

Research Themes
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01

Galanthamine Analogs

Creating Galanthamine Analogs through Biosynthetic Engineering

Galanthamine, a natural product from Amaryllidaceae plants, is used to treat Alzheimer’s disease. In addition to acetylcholinesterase inhibition, galanthamine has been reported to weakly promote neurogenesis and axonal regrowth. We aim to create analogs with enhanced activities related to neural recovery as a route toward new therapeutic leads for neurodegenerative diseases.

We therefore investigate the substrate and product specificities of biosynthetic enzymes for galanthamine and related Amaryllidaceae alkaloids, together with the molecular mechanisms that determine these properties. By combining substrate analogs with engineered enzymes, we seek to generate diverse non-natural galanthamine analogs and evaluate their biological activities to identify new leads aimed at restoring neural function.

02

Cannabinoid Analogs

Engineering Biosynthetic Enzymes to Create Cannabinoid Analogs

Plants produce diverse cannabinoids using a limited set of biosynthetic enzymes. Some cannabinoids show pharmacological activities of therapeutic interest, whereas psychoactive and other effects can limit their medical use. We investigate substrate recognition and reaction mechanisms of cannabinoid biosynthetic enzymes with the goal of controlling their functions.

By combining engineered biosynthetic enzymes with non-natural substrates, we seek to create cannabinoid analogs not found in nature, explore chemical space associated with new biological activities, and contribute to cannabinoid-based drug discovery with reduced psychoactive effects.

03

2OG Oxygenases

Discovery of Natural Inhibitors and High-Resolution Analysis of Inhibition

2-Oxoglutarate-dependent oxygenases (2OGXs) are an important enzyme family that regulates diverse biological processes, including hypoxic responses. Some 2OGXs are closely associated with disease. We search for new natural-product inhibitors of disease-relevant 2OGXs.

Through X-ray crystallographic analysis of enzyme–inhibitor complexes, we define inhibitor recognition and functional control at the atomic level and use these insights to guide the design of more selective inhibitors and drug-discovery leads.

04

Arsenic Natural Products

Biosynthetic Pathways of Arsenic-Containing Natural Products

We investigate arsenic-containing natural products and identify the enzymes and reaction pathways involved in their biosynthesis to understand how these molecules are formed in nature.

05

Anti-inflammatory Natural Products

Discovery of Anti-inflammatory Compounds from Natural Resources

Inflammation is an essential defense response against infection and tissue injury, but excessive or chronic inflammation contributes to the onset and progression of many diseases. Chronic inflammation is associated not only with inflammatory disorders such as arthritis but also with age-related diseases including atherosclerosis, diabetes, cancer, and Alzheimer’s disease. Appropriate control of inflammation is therefore important for maintaining health and for disease prevention and treatment.

We focus on diverse natural resources, including medicinal plants traditionally used for inflammatory conditions, and search for anti-inflammatory natural products through isolation, structural elucidation, and biological analysis. By taking advantage of the structural diversity of natural products, we aim to identify active compounds with properties distinct from existing anti-inflammatory agents and develop new leads for inflammatory diseases.

06

Cage-type Carbazoles

Synthesis and Biological Evaluation of Cage-type Carbazoles

Distinctive three-dimensional architectures in natural products can strongly influence biological activity. Complex caged structures, such as those found in gambogic acid, are characteristic motifs associated with potent biological effects. In contrast, alkaloids with such caged architectures are rare, and the biological consequences of introducing a caged structure into an alkaloid scaffold remain largely unexplored.

We focus on carbazole, a representative alkaloid scaffold, and combine enzymatic reactions with organic synthesis to create new cage-type carbazoles not found in nature. We integrate in silico target exploration, biological evaluation, and X-ray crystallography to define molecular recognition and structure–activity relationships. These insights are used to develop derivatives with improved activity or selectivity and to explore distinctive three-dimensional structures as new drug-discovery leads.

Research Highlights

Selected Research Highlights
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X-ray Structural Analysis of the 5-Azacytidine Biosynthetic Enzymes AzcA and AzcB/C

We revealed the structural basis for the unprecedented skeletal-editing reaction catalyzed by AzcA and the unusual decarboxylation catalyzed by AzcB/C, advancing understanding of 5-azacytidine biosynthesis.

AzcAとAzcB/Cによる5-アザシチジン生合成機構の研究成果詳細図
Nat. Catal. 2026. DOI: 10.1038/s41929-026-01611-x.

Crystal Structures of the tRNA-Dependent Enzymes Sba18 and Sbb17

Structural comparison of Sba18 and Sbb17, involved in streptothricin biosynthesis, identified residues that determine substrate specificity.

tRNA依存型酵素Sba18とSbb17の研究成果詳細図
J. Am. Chem. Soc. 2026, 148, 12154–12165.

Engineering an O-Methyltransferase in Amaryllidaceae Alkaloid Biosynthesis

We elucidated how substrate-induced loop rearrangement controls methylation selectivity and engineered the catalyst toward efficient production of rare alkaloids.

ヒガンバナアルカロイドOMTの研究成果詳細図
ACS Catal. 2024, 14, 11865–11880.

Structural and Functional Analysis of MslH in MS-271 Lasso-Peptide Biosynthesis

We used structural biology to elucidate the catalytic mechanism of the metal-dependent enzyme responsible for D-isomerization of the C-terminal tryptophan.

MslHの研究成果詳細図
Nat. Commun. 2023, 14, 4752.

Identification of a Core-Skeleton-Forming Enzyme in Agarwood Aromatic Metabolism

We identified PEPCS, an enzyme involved in formation of the 2-(2-phenylethyl)chromone scaffold, providing a basis for developing controlled agarwood production systems.

沈香生合成研究の成果詳細図
Nat. Commun. 2022, 13, 348.

Creation of Non-natural Compounds through OAC and TKS Engineering

Structure-guided active-site engineering enabled biosynthetic production of non-natural olivetolic-acid-related compounds.

OACとTKSの機能改変研究の成果詳細図
Org. Lett. 2022, 24, 410.

Chemical Investigation of the Traditional Use of Vietnamese Kaempferia marginata

Analysis of anti-inflammatory constituents revealed chemical features underlying a traditionally used medicinal plant.

Kaempferia marginata研究の成果詳細図
Phytochemistry 2022, 196, 113109; Phytochemistry 2023, 205, 113510.

Constituents and Melanogenesis-Inhibitory Activity of Thanaka, a Traditional Myanmar Cosmetic

We analyzed the constituents and melanogenesis-inhibitory activity of this traditional cosmetic material and examined its scientific basis.

タナカ研究の成果詳細図
Fitoterapia 2018, 127, 308; Fitoterapia 2019, 133, 35; Nat. Prod. Commun. 2019, 14, 113.

X-ray Structural Analysis of Cannabis Olivetolic Acid Cyclase (OAC)

We identified a hydrophobic pocket that recognizes substrate alkyl-chain length, establishing a structural basis for engineering cannabinoid biosynthetic enzymes.

OAC構造解析の成果詳細図
FEBS J. 2016, 283, 1088.

Structural Analysis of PGM1, an Enzyme that Modifies Diverse Peptide N-Termini

We determined the structure of an enzyme with a large substrate-binding site and revealed a molecular basis for diverse peptide-modification reactions.

PGM1研究の成果詳細図
Nat. Chem. Biol. 2015, 11, 71.