Reserchers

Shoji Tsubasa Professor

Tsubasa Shoji

AffiliationSection of Medicinal Resource Science, Division of Medicinal Resources, Department of Research and Development

Research fieldsPlant Molecular Biology / Plant Biotechnology

Campus careerDoctor (Bioscience)

Biography University of Toyama Faculty Research Profiles

Education

Faculty of Agriculture, Kyoto Univ., Kyoto 1995 BA
Graduate School of Biological Sciences, Nara Institute of Science and Technology (NAIST), Ikoma 1998 MS
Graduate School of Biological Sciences, NAIST, Ikoma 2001 PhD

Job career

Japan Society for the Promotion of Science (JSPS) Research Fellowship for Young Scientists (2000-2001)
Assistant Professor, Graduate School of Biological Sciences, NAIST, Ikoma (2001-2015)
JSPS Postdoctoral Fellowship for Research Abroad (2004-2006)
Associate Professor, Graduate School of Biological Sciences, NAIST, Ikoma (2015-2020)
Senior Research Scientist, RIKEN Center for Sustainable Resource Science (CSRS) (2020-2023)
Visiting Chief Scientist, RIKEN CSRS (2023-)
Professor, Institute of Natural Medicine, Univ. of Toyama, Toyama (2023-)

Research theme

Department

Division

Section

Project

Outline of the research

The goal of our research is to increase the production and improve the metabolism of bioactive and valuable natural compounds found in Japanese medicinal plants and other plant resources, both qualitatively and quantitatively. To do this, we investigate metabolic systems at the cellular, genetic, and genomic levels. Guided by our experience in studying toxic alkaloids in the Solanaceae family of plants (e.g., tobacco, tomato, Atropa belladonna), we use molecular genetics and metabolic engineering to promote the development of plant resources and thereby contribute to improving natural medicine and human health. Specifically, our research focuses on the molecular regulation of alkaloid and terpenoid pathways in medicinal plants of the Solanaceae family, novel regulatory mechanisms of alkaloid pathways in tobacco plants, and biosynthesis and accumulation of natural sweeteners. We also collaborate with industry partners to apply our research to the stable supply and production of herbal medicines.

Thoughts on research

I think of my research as being like a steady but stimulating and rewarding quest, a walk toward the summits of the Tateyama Mountain range or seeking the source of the Kurobe River. Our walk keeps up a brisk pace––indeed, phytochemical research has developed and expanded rapidly in recent years, thanks to next-generation sequencing, mass spectrometry, and genome editing approaches. We start in a dense forest, as conventional natural product chemistry comprises a bewilderingly large collection of diverse chemical structures and activities where it’s difficult to see beyond the trees. Much like cresting a hill and seeing a new vista, however, the introduction of molecular biology, genomics, and metabolomics has allowed us to investigate metabolic systems in the context of plant biology. And, like we might seek the origin of the Kurobe River, the fundamental question of our research concerns the origin of chemical diversity––specifically why plants evolved to synthesize and accumulate natural products specific to each species or genus. At the Center for Medicinal Sciences in Toyama, a city closely associated with Japanese Nobel laureates, we continue our quest for understanding, using novel approaches to develop valuable biological resources and contribute to the health and longevity of all members of society.

Paper

Shoji T*, Sugawara S, Mori T, Kobayashi M, Kusano M, Saito K. Induced production of specialized steroids by transcriptional reprogramming in Petunia hybrida. PNAS Nexus 2:pgad326

Shoji T*, Moriyama K, Sierro N, Ouadi S, Ivanov NV, Hashimoto T, Saito K (2022) Natural and induced variations in transcriptional regulator genes result in low-nicotine phenotypes in tobacco. Plant J 111:1768-1779

Shoji T* & Yuan L* (2020) ERF gene clusters; working together to regulate metabolism. Trends Plant Sci 26: 23-32

Thagun C, Imanishi S, Kudo T, Nakabayashi R, Ohyama K, Mori T, Kawamoto K, Nakamura Y, Katayama M, Nonaka S, Matsukura C, Yano K, Ezura H, Saito K, Hashimoto T, Shoji T* (2016) Jasmonate-responsive ERF transcription factors regulate steroidal glycoalkaloid biosynthesis in tomato. Plant Cell Physiol 57: 961-975

Shoji T, Kajikawa M, Hashimoto T* (2010) Clustered transcription factors regulate nicotine biosynthesis in tobacco. Plant Cell 22: 3390-3409

keyword

medicinal plants, metabolic genome engineering, metabolomics, Solanaceae family, alkaloids, terpenoids